pyfim.analysis.stop_duration

pyfim.analysis.stop_duration(exp)

Calculates mean duration of a stop. This analysis is based on MatLab code by Dimitri Berh (University of Muenster, Germany).

Notes

This function measures the average length of phases in which go_phase is zero. You can finetune this behaviour by adjusting the following parameter in the config file:

• MIN_STOP_PHASE: minimum number of frames for a stop

Parameters:exp (pyfim.Experiment) – Experiment holding the raw data. Returns:Mean stop duration [Frames] Return type:pandas.DataFrame